Variant report

Variant	rs435805
Chromosome Location	chr5:57673635-57673636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1508920	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs151918	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs181748	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs244699	0.97[ASN][1000 genomes]
rs244701	0.94[ASN][1000 genomes]
rs244702	0.97[ASN][1000 genomes]
rs245458	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs245459	0.97[ASN][1000 genomes]
rs2652497	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2662609	0.92[ASN][1000 genomes]
rs26970	0.91[ASN][1000 genomes]
rs26971	0.94[ASN][1000 genomes]
rs26972	0.94[ASN][1000 genomes]
rs26973	0.94[ASN][1000 genomes]
rs26974	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26975	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26977	0.97[ASN][1000 genomes]
rs27568	0.89[ASN][1000 genomes]
rs27724	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27937	0.97[ASN][1000 genomes]
rs28017	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32629	0.89[ASN][1000 genomes]
rs36646	0.82[ASN][1000 genomes]
rs36647	0.83[ASN][1000 genomes]
rs375523	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs378828	0.97[ASN][1000 genomes]
rs393809	0.83[ASN][1000 genomes]
rs40169	0.97[ASN][1000 genomes]
rs40622	0.80[ASN][1000 genomes]
rs420498	0.83[ASN][1000 genomes]
rs42317	0.83[ASN][1000 genomes]
rs445309	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs696190	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs696191	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs697086	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs697136	0.94[ASN][1000 genomes]
rs697137	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs702596	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702597	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702598	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs834934	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs834936	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs835232	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4842	chr5:57653257-57694850	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv508358	chr5:57673230-57709684	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57673200-57676000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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