Variant report

Variant	rs193497
Chromosome Location	chr5:57641840-57641841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57640162..57641929-chr5:57650498..57652740,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs151865	1.00[EUR][1000 genomes]
rs151870	1.00[EUR][1000 genomes]
rs154672	0.84[JPT][hapmap]
rs168652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs181748	0.91[AFR][1000 genomes]
rs181749	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs245281	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245283	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs245284	0.90[EUR][1000 genomes]
rs245286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245294	0.84[ASN][1000 genomes]
rs245465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs245468	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs245469	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs26970	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs26971	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs26972	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs26973	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs26974	0.84[AFR][1000 genomes]
rs26975	0.91[AFR][1000 genomes]
rs27568	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs27724	0.91[AFR][1000 genomes]
rs27937	0.90[JPT][hapmap]
rs28017	0.83[CEU][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes]
rs32629	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36646	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs36647	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs375523	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs378828	0.90[JPT][hapmap]
rs393809	0.90[EUR][1000 genomes]
rs40169	0.91[JPT][hapmap]
rs40622	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs420498	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs42317	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs445309	0.91[AFR][1000 genomes]
rs697137	0.81[CEU][hapmap];0.90[JPT][hapmap]
rs835232	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57635400-57645600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:57637000-57642200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:57641400-57642800	Enhancers	Placenta	Placenta
4	chr5:57641600-57642000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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