Variant report

Variant	rs151865
Chromosome Location	chr5:57608312-57608313
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57607237..57609695-chr5:57612887..57615120,2	MCF-7	breast:
2	chr5:57607951..57610454-chr5:57754515..57756125,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10045556	0.87[ASN][1000 genomes]
rs10076155	0.89[ASN][1000 genomes]
rs12187672	0.89[ASN][1000 genomes]
rs12188902	0.89[ASN][1000 genomes]
rs12658947	0.88[ASN][1000 genomes]
rs12659412	0.88[ASN][1000 genomes]
rs151870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151872	0.94[ASN][1000 genomes]
rs151873	0.94[ASN][1000 genomes]
rs151874	0.94[ASN][1000 genomes]
rs151875	0.94[ASN][1000 genomes]
rs151876	0.94[ASN][1000 genomes]
rs151877	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs151878	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs168652	1.00[EUR][1000 genomes]
rs173448	1.00[EUR][1000 genomes]
rs17696032	0.89[ASN][1000 genomes]
rs181749	0.96[EUR][1000 genomes]
rs193497	1.00[EUR][1000 genomes]
rs245281	0.94[EUR][1000 genomes]
rs245283	0.94[EUR][1000 genomes]
rs245284	0.90[EUR][1000 genomes]
rs245286	1.00[EUR][1000 genomes]
rs245465	1.00[EUR][1000 genomes]
rs245466	1.00[EUR][1000 genomes]
rs245467	1.00[EUR][1000 genomes]
rs245468	0.96[EUR][1000 genomes]
rs245469	0.92[EUR][1000 genomes]
rs26970	0.88[EUR][1000 genomes]
rs26971	0.88[EUR][1000 genomes]
rs26972	0.88[EUR][1000 genomes]
rs26973	0.88[EUR][1000 genomes]
rs27568	0.88[EUR][1000 genomes]
rs32629	0.88[EUR][1000 genomes]
rs36646	0.92[EUR][1000 genomes]
rs36647	0.92[EUR][1000 genomes]
rs393809	0.90[EUR][1000 genomes]
rs40622	0.92[EUR][1000 genomes]
rs420498	0.90[EUR][1000 genomes]
rs42317	0.92[EUR][1000 genomes]
rs56942787	0.89[ASN][1000 genomes]
rs5868101	0.90[ASN][1000 genomes]
rs68192123	0.89[ASN][1000 genomes]
rs6858896	0.89[ASN][1000 genomes]
rs72755740	0.88[ASN][1000 genomes]
rs72755746	0.90[ASN][1000 genomes]
rs72755747	0.90[ASN][1000 genomes]
rs835232	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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