Variant report

Variant	rs10076155
Chromosome Location	chr5:57567125-57567126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57560759..57562521-chr5:57565153..57567318,2	MCF-7	breast:
2	chr5:57564755..57567505-chr5:57575304..57577726,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10045556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12187672	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188902	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658947	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659412	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1477347	0.86[EUR][1000 genomes]
rs151865	0.89[ASN][1000 genomes]
rs151870	0.89[ASN][1000 genomes]
rs151872	0.95[ASN][1000 genomes]
rs151873	0.95[ASN][1000 genomes]
rs151874	0.95[ASN][1000 genomes]
rs151875	0.95[ASN][1000 genomes]
rs151876	0.95[ASN][1000 genomes]
rs151877	0.95[ASN][1000 genomes]
rs151878	0.95[ASN][1000 genomes]
rs17695268	0.86[EUR][1000 genomes]
rs17696032	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052548	0.86[EUR][1000 genomes]
rs2409008	0.86[EUR][1000 genomes]
rs56942787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5868101	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68192123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858896	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892109	0.86[EUR][1000 genomes]
rs72755727	0.85[EUR][1000 genomes]
rs72755734	0.86[EUR][1000 genomes]
rs72755740	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72755746	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72755747	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57562600-57568000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57563200-57569000	Weak transcription	A549	lung
3	chr5:57566800-57567200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:57567000-57569200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:57567000-57571600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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