Variant report

Variant	rs151874
Chromosome Location	chr5:57595353-57595354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10038254	0.80[AFR][1000 genomes]
rs10045556	0.93[ASN][1000 genomes]
rs10051111	0.88[AFR][1000 genomes]
rs10056664	0.83[AFR][1000 genomes]
rs10076155	0.95[ASN][1000 genomes]
rs10213740	0.94[AFR][1000 genomes]
rs10214231	0.90[ASW][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12187672	0.95[ASN][1000 genomes]
rs12188902	0.95[ASN][1000 genomes]
rs12658947	0.94[ASN][1000 genomes]
rs12659412	0.94[ASN][1000 genomes]
rs1477347	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs151865	0.94[ASN][1000 genomes]
rs151870	0.94[ASN][1000 genomes]
rs151872	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151877	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151878	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695268	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17696032	0.95[ASN][1000 genomes]
rs2052548	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs2964199	0.82[CHB][hapmap]
rs41445844	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs56041252	0.83[AFR][1000 genomes]
rs56942787	0.95[ASN][1000 genomes]
rs5868101	0.96[ASN][1000 genomes]
rs68192123	0.95[ASN][1000 genomes]
rs6858896	0.95[ASN][1000 genomes]
rs6862014	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs6891097	0.89[CEU][hapmap]
rs72755740	0.94[ASN][1000 genomes]
rs72755746	0.96[ASN][1000 genomes]
rs72755747	0.96[ASN][1000 genomes]
rs73099017	0.80[AFR][1000 genomes]
rs73099025	0.83[AFR][1000 genomes]
rs73099097	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:57591400-57596400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:57594400-57595400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:57595200-57596000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:57595200-57596400	Enhancers	Placenta	Placenta

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