Variant report

Variant	rs5868101
Chromosome Location	chr5:57576561-57576562
allele	-/AT/CACA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57564755..57567505-chr5:57575304..57577726,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10045556	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076155	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12187672	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12188902	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12658947	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12659412	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1477347	0.83[AMR][1000 genomes]
rs151865	0.90[ASN][1000 genomes]
rs151870	0.90[ASN][1000 genomes]
rs151872	0.96[ASN][1000 genomes]
rs151873	0.96[ASN][1000 genomes]
rs151874	0.96[ASN][1000 genomes]
rs151875	0.96[ASN][1000 genomes]
rs151876	0.96[ASN][1000 genomes]
rs151877	0.96[ASN][1000 genomes]
rs151878	0.96[ASN][1000 genomes]
rs17696032	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052548	0.83[AMR][1000 genomes]
rs2409008	0.81[AMR][1000 genomes]
rs56942787	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68192123	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858896	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6892109	0.83[AMR][1000 genomes]
rs72755727	0.83[AMR][1000 genomes]
rs72755734	0.85[AMR][1000 genomes]
rs72755740	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755746	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755747	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1760468	chr5:57576558-57576562	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57570200-57577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:57575000-57577000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:57575000-57577800	Enhancers	NHEK	skin
4	chr5:57576200-57576800	Weak transcription	HMEC	breast
5	chr5:57576400-57577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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