Variant report

Variant	rs17696032
Chromosome Location	chr5:57564508-57564509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10045556	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10057511	0.91[JPT][hapmap]
rs10076155	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187672	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188902	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658947	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12659412	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1477347	0.85[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs151865	0.89[ASN][1000 genomes]
rs151870	0.89[ASN][1000 genomes]
rs151872	0.95[ASN][1000 genomes]
rs151873	0.95[ASN][1000 genomes]
rs151874	0.95[ASN][1000 genomes]
rs151875	0.95[ASN][1000 genomes]
rs151876	0.95[ASN][1000 genomes]
rs151877	0.95[ASN][1000 genomes]
rs151878	0.95[ASN][1000 genomes]
rs17695268	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17707535	0.84[AFR][1000 genomes]
rs17763980	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2052548	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2409008	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41445844	0.91[JPT][hapmap]
rs56942787	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5868101	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs68192123	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858896	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862014	0.92[JPT][hapmap]
rs6892109	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72755727	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72755734	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72755740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72755746	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72755747	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57562600-57568000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57563200-57569000	Weak transcription	A549	lung
3	chr5:57563600-57564600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:57563600-57564600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:57564400-57566800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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