Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:57530338..57532834-chr5:57737218..57739511,2	MCF-7	breast:
2	chr5:57517523..57520170-chr5:57529878..57532281,2	MCF-7	breast:
3	chr5:57531555..57534563-chr5:57754511..57756202,3	MCF-7	breast:
4	chr5:57531620..57533585-chr5:57553744..57556130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10045556	0.86[EUR][1000 genomes]
rs10057511	0.82[JPT][hapmap]
rs10076155	0.86[EUR][1000 genomes]
rs12187672	0.84[EUR][1000 genomes]
rs12188902	0.84[EUR][1000 genomes]
rs12658947	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12659412	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1477347	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17696032	0.86[EUR][1000 genomes]
rs2052548	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2409008	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2964199	0.82[CHB][hapmap]
rs41445844	0.91[JPT][hapmap]
rs55966191	0.97[ASN][1000 genomes]
rs56942787	0.86[EUR][1000 genomes]
rs68192123	0.86[EUR][1000 genomes]
rs6858896	0.86[EUR][1000 genomes]
rs6862014	0.91[JPT][hapmap]
rs6892109	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72755727	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72755734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72755740	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
5	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
6	chr5:57527200-57532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:57527200-57535600	Weak transcription	HMEC	breast
8	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:57531400-57534400	Weak transcription	Hela-S3	cervix
10	chr5:57531400-57535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:57531600-57535800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:57531600-57535800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:57531600-57535800	Weak transcription	NHDF-Ad	bronchial
14	chr5:57531600-57536000	Weak transcription	Osteobl	bone
15	chr5:57531800-57534400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr5:57532000-57534200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr5:57532000-57535600	Enhancers	A549	lung
18	chr5:57532200-57534200	Weak transcription	Primary monocytes fromperipheralblood	blood

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