Variant report

Variant	rs55966191
Chromosome Location	chr5:57523478-57523479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1477347	0.98[ASN][1000 genomes]
rs17695268	0.97[ASN][1000 genomes]
rs2052548	0.98[ASN][1000 genomes]
rs2409008	0.96[ASN][1000 genomes]
rs6892109	0.94[ASN][1000 genomes]
rs72755727	1.00[ASN][1000 genomes]
rs72755734	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3400939	chr5:57522938-57523508	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57520600-57526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:57520800-57526000	Weak transcription	NHEK	skin
3	chr5:57521000-57526000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:57522000-57525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57522000-57525800	Weak transcription	Psoas Muscle	Psoas
7	chr5:57522600-57531000	Weak transcription	Osteobl	bone
8	chr5:57522800-57524600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:57523000-57526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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