Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10045556	0.85[EUR][1000 genomes]
rs10076155	0.85[EUR][1000 genomes]
rs12187672	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12188902	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12658947	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12659412	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1477347	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17695268	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17696032	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2052548	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2409008	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910580	0.80[AMR][1000 genomes]
rs2964199	0.86[AMR][1000 genomes]
rs55966191	1.00[ASN][1000 genomes]
rs56942787	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs5868101	0.83[AMR][1000 genomes]
rs68192123	0.85[EUR][1000 genomes]
rs6858896	0.85[EUR][1000 genomes]
rs6892109	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72755734	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72755740	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72755746	0.85[AMR][1000 genomes]
rs72755747	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57522600-57531000	Weak transcription	Osteobl	bone
3	chr5:57525200-57528600	Enhancers	A549	lung
4	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:57525800-57527200	Enhancers	HMEC	breast
6	chr5:57525800-57527400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:57525800-57527600	Enhancers	Hela-S3	cervix
8	chr5:57526000-57527200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:57526000-57527200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:57526000-57527200	Enhancers	NHEK	skin
11	chr5:57526200-57526800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:57526200-57527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:57526200-57529400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
16	chr5:57526200-57544000	Weak transcription	Aorta	Aorta

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