Variant report

Variant	rs10045556
Chromosome Location	chr5:57562751-57562752
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10057511	0.90[JPT][hapmap]
rs10076155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12187672	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12188902	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12658947	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12659412	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1477347	0.85[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs151865	0.87[ASN][1000 genomes]
rs151870	0.87[ASN][1000 genomes]
rs151872	0.93[ASN][1000 genomes]
rs151873	0.93[ASN][1000 genomes]
rs151874	0.93[ASN][1000 genomes]
rs151875	0.93[ASN][1000 genomes]
rs151876	0.93[ASN][1000 genomes]
rs151877	0.93[ASN][1000 genomes]
rs151878	0.93[ASN][1000 genomes]
rs17695268	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs17696032	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17763980	0.89[TSI][hapmap]
rs2052548	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs2409008	0.86[EUR][1000 genomes]
rs2964199	0.82[CHB][hapmap]
rs37521	0.84[MEX][hapmap]
rs41445844	0.91[JPT][hapmap]
rs43217	0.84[MEX][hapmap]
rs56942787	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5868101	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68192123	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6858896	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6862014	0.91[JPT][hapmap]
rs6892109	0.86[EUR][1000 genomes]
rs72755727	0.85[EUR][1000 genomes]
rs72755734	0.86[EUR][1000 genomes]
rs72755740	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72755746	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72755747	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10045556	DDX4	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57559000-57563600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:57562200-57562800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:57562200-57562800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:57562200-57562800	Enhancers	HUVEC	blood vessel
5	chr5:57562600-57563000	Weak transcription	A549	lung
6	chr5:57562600-57568000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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