Variant report

Variant	rs2964199
Chromosome Location	chr5:57532775-57532776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12658947	0.82[AMR][1000 genomes]
rs12659412	0.82[AMR][1000 genomes]
rs1477347	0.86[AMR][1000 genomes]
rs17695268	0.82[CHB][hapmap]
rs2052548	0.84[CHB][hapmap];0.86[AMR][1000 genomes]
rs2409008	0.83[AMR][1000 genomes]
rs2910580	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964198	0.86[JPT][hapmap]
rs37519	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs37520	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs37521	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs43217	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs72755727	0.86[AMR][1000 genomes]
rs72755734	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
5	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
6	chr5:57527200-57535600	Weak transcription	HMEC	breast
7	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:57531400-57534400	Weak transcription	Hela-S3	cervix
9	chr5:57531400-57535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57531600-57535800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57531600-57535800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57531600-57535800	Weak transcription	NHDF-Ad	bronchial
13	chr5:57531600-57536000	Weak transcription	Osteobl	bone
14	chr5:57531800-57534400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:57532000-57534200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:57532000-57535600	Enhancers	A549	lung
17	chr5:57532200-57534200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:57532600-57532800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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