Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:57533424..57535901-chr5:57754977..57757820,3	MCF-7	breast:
2	chr5:57474524..57477052-chr5:57532644..57534284,2	MCF-7	breast:
3	chr5:57531555..57534563-chr5:57754511..57756202,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1549245	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2409006	0.82[EUR][1000 genomes]
rs2910578	0.86[YRI][hapmap];0.82[EUR][1000 genomes]
rs2910579	0.82[EUR][1000 genomes]
rs2910581	0.80[EUR][1000 genomes]
rs2910582	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2910583	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2910584	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2910585	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2910606	0.87[ASW][hapmap];0.84[TSI][hapmap]
rs2962007	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2964192	0.87[ASW][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap]
rs2964197	0.81[EUR][1000 genomes]
rs2964199	0.86[JPT][hapmap]
rs2964201	0.80[EUR][1000 genomes]
rs37491	0.87[TSI][hapmap]
rs37518	0.87[ASW][hapmap];0.82[TSI][hapmap]
rs37520	0.86[JPT][hapmap]
rs43217	0.81[GIH][hapmap]
rs7715909	0.87[ASW][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
5	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
6	chr5:57527200-57535600	Weak transcription	HMEC	breast
7	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:57531400-57534400	Weak transcription	Hela-S3	cervix
9	chr5:57531400-57535800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57531600-57535800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57531600-57535800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57531600-57535800	Weak transcription	NHDF-Ad	bronchial
13	chr5:57531600-57536000	Weak transcription	Osteobl	bone
14	chr5:57531800-57534400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr5:57532000-57534200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:57532000-57535600	Enhancers	A549	lung
17	chr5:57532200-57534200	Weak transcription	Primary monocytes fromperipheralblood	blood

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