Variant report

Variant	rs2910581
Chromosome Location	chr5:57527799-57527800
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57527499..57530106-chr5:57539853..57541635,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1549245	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1562242	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1862540	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972647	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2409006	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2910578	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2910579	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910582	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2910583	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2910584	0.81[EUR][1000 genomes]
rs2910585	0.80[EUR][1000 genomes]
rs2910586	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910606	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2962007	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2962025	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964190	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964192	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964194	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964196	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964197	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2964198	0.80[EUR][1000 genomes]
rs2964201	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37515	0.81[AMR][1000 genomes]
rs37517	0.81[AMR][1000 genomes]
rs37518	0.81[AMR][1000 genomes]
rs37525	0.84[AMR][1000 genomes]
rs37529	0.84[AMR][1000 genomes]
rs37530	0.84[AMR][1000 genomes]
rs40531	0.81[AMR][1000 genomes]
rs7715909	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs972060	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972061	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57522600-57531000	Weak transcription	Osteobl	bone
3	chr5:57525200-57528600	Enhancers	A549	lung
4	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:57526200-57529400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
8	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
9	chr5:57526800-57530800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:57527200-57530800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:57527200-57531000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:57527200-57531000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:57527200-57531000	Weak transcription	NHEK	skin
14	chr5:57527200-57532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:57527200-57535600	Weak transcription	HMEC	breast
16	chr5:57527400-57535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:57527600-57528000	Weak transcription	Hela-S3	cervix

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