Variant report

Variant	rs2964192
Chromosome Location	chr5:57547419-57547420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57543326..57547430-chr5:57753022..57757263,5	MCF-7	breast:
2	chr5:57546757..57549531-chr5:57552284..57556177,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1562242	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1862540	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1972647	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2409006	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910578	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2910581	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910586	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910606	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2962007	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2962025	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964190	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2964194	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964196	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2964197	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2964198	0.87[ASW][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap]
rs2964201	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37489	0.85[AMR][1000 genomes]
rs37491	0.83[TSI][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs37513	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs37514	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs37515	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs37517	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs37518	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs37525	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs37529	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs37530	0.90[AMR][1000 genomes]
rs40531	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs41385	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs7715909	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs972060	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs972061	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
2	chr5:57543000-57555600	Weak transcription	Right Atrium	heart
3	chr5:57543200-57552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:57547200-57554600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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