Variant report

Variant	rs37491
Chromosome Location	chr5:57590471-57590472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57589779..57592540-chr5:57753522..57755652,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1562242	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1862540	0.84[AMR][1000 genomes]
rs1972647	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2409006	0.83[AMR][1000 genomes]
rs2910606	0.87[ASW][hapmap];0.85[CEU][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2962007	0.82[AMR][1000 genomes]
rs2962025	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2964190	0.85[AMR][1000 genomes]
rs2964192	0.83[TSI][hapmap];0.82[YRI][hapmap];0.85[AMR][1000 genomes]
rs2964194	0.85[AMR][1000 genomes]
rs2964196	0.82[AMR][1000 genomes]
rs2964197	0.81[AMR][1000 genomes]
rs2964198	0.87[TSI][hapmap]
rs37489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37511	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs37513	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37514	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37515	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37517	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37518	0.87[ASW][hapmap];0.85[CEU][hapmap];0.94[LWK][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs37525	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37529	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37530	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs40531	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41385	0.93[ASN][1000 genomes]
rs466047	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7715909	0.87[ASW][hapmap];0.85[CEU][hapmap];0.87[LWK][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs972060	0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs972061	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590000-57591400	Enhancers	HMEC	breast
2	chr5:57590000-57591600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57590200-57591400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57590200-57591400	Enhancers	NHEK	skin
5	chr5:57590200-57591600	Enhancers	HUVEC	blood vessel
6	chr5:57590400-57590800	Enhancers	NH-A	brain
7	chr5:57590400-57591000	Enhancers	HSMM	muscle
8	chr5:57590400-57591000	Enhancers	NHDF-Ad	bronchial
9	chr5:57590400-57591200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:57590400-57591200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57590400-57591200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:57590400-57591200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr5:57590400-57591400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:57590400-57591400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr5:57590400-57592000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:57590400-57592200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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