Variant report
| Variant | rs466047 |
|---|---|
| Chromosome Location | chr5:57608319-57608320 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs151914 | 0.84[AFR][1000 genomes] |
| rs1562242 | 0.81[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1972647 | 0.80[ASN][1000 genomes] |
| rs245481 | 0.88[AFR][1000 genomes] |
| rs27209 | 0.85[AFR][1000 genomes] |
| rs2910606 | 0.83[ASN][1000 genomes] |
| rs37489 | 0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs37491 | 0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs37513 | 0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs37514 | 0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs37515 | 0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs37517 | 0.82[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs37518 | 0.83[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs37525 | 0.88[ASN][1000 genomes] |
| rs37529 | 0.81[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs37530 | 0.88[ASN][1000 genomes] |
| rs40531 | 0.83[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs41385 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7715909 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3489100 | chr5:57545689-57669673 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3489101 | chr5:57545689-57669673 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
