Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57611690..57614389-chr5:57754372..57756310,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs151807	0.89[JPT][hapmap]
rs151914	0.80[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs1562242	0.88[ASN][1000 genomes]
rs181764	0.80[CHB][hapmap];0.82[JPT][hapmap];0.80[AFR][1000 genomes]
rs184999	0.85[JPT][hapmap]
rs190304	0.82[JPT][hapmap]
rs1972647	0.81[ASN][1000 genomes]
rs245481	0.80[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs245491	0.80[JPT][hapmap]
rs2910578	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2910606	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2964192	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs37489	0.93[ASN][1000 genomes]
rs37491	0.93[ASN][1000 genomes]
rs37513	0.90[ASN][1000 genomes]
rs37514	0.90[ASN][1000 genomes]
rs37515	0.90[ASN][1000 genomes]
rs37517	0.90[ASN][1000 genomes]
rs37518	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs37525	0.89[ASN][1000 genomes]
rs37529	0.89[ASN][1000 genomes]
rs37530	0.89[ASN][1000 genomes]
rs37535	0.80[JPT][hapmap]
rs40531	0.90[ASN][1000 genomes]
rs42964	0.80[JPT][hapmap]
rs466047	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7715909	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs972060	0.84[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57608400-57616600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:57609200-57615400	Weak transcription	Psoas Muscle	Psoas
3	chr5:57611000-57618200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:57611000-57618400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:57611000-57618400	Weak transcription	HMEC	breast
6	chr5:57611200-57612800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:57611200-57612800	Weak transcription	HUVEC	blood vessel
8	chr5:57611200-57614600	Weak transcription	Hela-S3	cervix
9	chr5:57611200-57618600	Weak transcription	NHEK	skin
10	chr5:57611400-57617600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:57611800-57618200	Weak transcription	A549	lung

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