Variant report

Variant	rs37530
Chromosome Location	chr5:57570622-57570623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1562242	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1862540	0.83[AMR][1000 genomes]
rs1972647	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2409006	0.82[AMR][1000 genomes]
rs2910578	0.85[AMR][1000 genomes]
rs2910579	0.85[AMR][1000 genomes]
rs2910581	0.84[AMR][1000 genomes]
rs2910606	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2962007	0.87[AMR][1000 genomes]
rs2962025	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2964190	0.90[AMR][1000 genomes]
rs2964192	0.90[AMR][1000 genomes]
rs2964194	0.90[AMR][1000 genomes]
rs2964196	0.87[AMR][1000 genomes]
rs2964197	0.86[AMR][1000 genomes]
rs2964201	0.84[AMR][1000 genomes]
rs37489	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37491	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs37511	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs37513	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37514	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37515	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37517	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37518	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40531	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41385	0.89[ASN][1000 genomes]
rs466047	0.88[ASN][1000 genomes]
rs7715909	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs972060	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs972061	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57567000-57571600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57568200-57571800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:57570000-57571200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:57570200-57575800	Weak transcription	HMEC	breast
5	chr5:57570200-57577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:57570400-57574800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:57570400-57575000	Weak transcription	HUVEC	blood vessel
8	chr5:57570400-57575000	Weak transcription	NHEK	skin
9	chr5:57570600-57575000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links