Variant report

Variant	rs1862540
Chromosome Location	chr5:57525633-57525634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1549245	0.82[EUR][1000 genomes]
rs1562242	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1972647	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2409006	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2910578	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2910579	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910581	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910582	0.82[EUR][1000 genomes]
rs2910583	0.82[EUR][1000 genomes]
rs2910584	0.82[EUR][1000 genomes]
rs2910585	0.81[EUR][1000 genomes]
rs2910586	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910606	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2962007	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2962025	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964190	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964192	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964194	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964196	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2964197	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2964201	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37489	0.84[AMR][1000 genomes]
rs37491	0.84[AMR][1000 genomes]
rs37513	0.85[AMR][1000 genomes]
rs37514	0.85[AMR][1000 genomes]
rs37515	0.86[AMR][1000 genomes]
rs37517	0.86[AMR][1000 genomes]
rs37518	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes]
rs37525	0.83[AMR][1000 genomes]
rs37529	0.83[AMR][1000 genomes]
rs37530	0.83[AMR][1000 genomes]
rs40531	0.86[AMR][1000 genomes]
rs41385	0.91[JPT][hapmap]
rs7715909	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs972060	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs972061	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57520600-57526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:57520800-57526000	Weak transcription	NHEK	skin
3	chr5:57521000-57526000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:57522000-57525800	Weak transcription	Psoas Muscle	Psoas
6	chr5:57522600-57531000	Weak transcription	Osteobl	bone
7	chr5:57523000-57526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:57525200-57526200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:57525200-57528600	Enhancers	A549	lung
10	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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