Variant report

Variant	rs2910584
Chromosome Location	chr5:57525196-57525197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1549245	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862540	0.82[EUR][1000 genomes]
rs2910579	0.81[AFR][1000 genomes]
rs2910581	0.81[EUR][1000 genomes]
rs2910582	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910583	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910585	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910586	0.82[EUR][1000 genomes]
rs2910606	0.87[ASW][hapmap];0.80[TSI][hapmap]
rs2964192	0.87[ASW][hapmap];0.89[TSI][hapmap]
rs2964198	0.87[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2964199	0.86[JPT][hapmap]
rs2964201	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2964202	0.84[AFR][1000 genomes]
rs37491	0.85[TSI][hapmap]
rs37518	0.87[ASW][hapmap]
rs37520	0.86[JPT][hapmap]
rs7715909	0.87[ASW][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57520600-57526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:57520800-57526000	Weak transcription	NHEK	skin
3	chr5:57521000-57526000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:57522000-57525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57522000-57525800	Weak transcription	Psoas Muscle	Psoas
7	chr5:57522600-57531000	Weak transcription	Osteobl	bone
8	chr5:57523000-57526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57524600-57525200	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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