Variant report

Variant	rs2910582
Chromosome Location	chr5:57526635-57526636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1549245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862540	0.82[EUR][1000 genomes]
rs2409006	0.80[AFR][1000 genomes]
rs2910579	0.83[AFR][1000 genomes]
rs2910581	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2910583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910584	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910586	0.82[EUR][1000 genomes]
rs2910606	0.87[ASW][hapmap]
rs2964192	0.87[ASW][hapmap];0.87[TSI][hapmap]
rs2964198	0.87[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2964199	0.86[JPT][hapmap]
rs2964201	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2964202	0.86[AFR][1000 genomes]
rs37491	0.82[TSI][hapmap]
rs37518	0.87[ASW][hapmap]
rs37520	0.86[JPT][hapmap]
rs7715909	0.87[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57521800-57535600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:57522600-57531000	Weak transcription	Osteobl	bone
3	chr5:57525200-57528600	Enhancers	A549	lung
4	chr5:57525200-57535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:57525800-57527200	Enhancers	HMEC	breast
6	chr5:57525800-57527400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:57525800-57527600	Enhancers	Hela-S3	cervix
8	chr5:57526000-57527200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:57526000-57527200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:57526000-57527200	Enhancers	NHEK	skin
11	chr5:57526200-57526800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:57526200-57527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:57526200-57529400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:57526200-57535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:57526200-57535600	Weak transcription	Psoas Muscle	Psoas
16	chr5:57526200-57544000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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