Variant report

Variant	rs17763980
Chromosome Location	chr5:57591672-57591673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17438760	1.00[CHD][hapmap]
rs17696032	0.84[AFR][1000 genomes]
rs17707535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17764708	1.00[CHD][hapmap]
rs72755740	0.84[AFR][1000 genomes]
rs72755746	0.84[AFR][1000 genomes]
rs72755786	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17763980	DDX4	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590400-57592000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57590400-57592200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:57590600-57592200	Enhancers	Primary hematopoietic stem cells	blood
4	chr5:57590600-57592200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:57590800-57597800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:57591400-57596400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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