Variant report

Variant	rs17438760
Chromosome Location	chr5:57491648-57491649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17370923	0.84[ASW][hapmap];1.00[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs17371148	1.00[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs17763980	1.00[CHD][hapmap]
rs17764708	1.00[CHD][hapmap]
rs56833485	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58675651	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66464750	0.85[EUR][1000 genomes]
rs66473131	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66812437	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6882495	0.89[CEU][hapmap]
rs72753372	0.82[EUR][1000 genomes]
rs72753400	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969959	chr5:57486620-57495174	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57487800-57497600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57491400-57491800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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