Variant report

Variant	rs66473131
Chromosome Location	chr5:57483861-57483862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
2	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
3	chr5:57376378..57378966-chr5:57481902..57484243,2	MCF-7	breast:
4	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:
5	chr5:57390968..57391561-chr5:57483766..57484570,2	MCF-7	breast:
6	chr5:57481839..57487904-chr5:57753425..57757545,13	MCF-7	breast:
7	chr5:57482131..57485678-chr5:57554046..57557182,5	MCF-7	breast:
8	chr5:57156959..57158801-chr5:57482652..57484519,2	MCF-7	breast:
9	chr5:57390904..57391715-chr5:57483326..57484235,2	MCF-7	breast:
10	chr5:57482679..57484288-chr5:57751026..57752676,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rs_ID	r²[population]
rs17370923	0.83[EUR][1000 genomes]
rs17371148	0.82[EUR][1000 genomes]
rs17438760	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56833485	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58675651	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66464750	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs66812437	0.89[EUR][1000 genomes]
rs67843459	0.81[EUR][1000 genomes]
rs72753372	0.83[EUR][1000 genomes]
rs72753400	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57486000	Enhancers	HSMM	muscle
2	chr5:57478800-57484200	Weak transcription	Left Ventricle	heart
3	chr5:57478800-57484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:57479000-57484000	Weak transcription	Fetal Kidney	kidney
5	chr5:57479400-57485200	Weak transcription	Aorta	Aorta
6	chr5:57480000-57486000	Enhancers	Osteobl	bone
7	chr5:57482600-57486000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:57482600-57486000	Enhancers	HMEC	breast
9	chr5:57482800-57484200	Flanking Active TSS	A549	lung
10	chr5:57482800-57485000	Enhancers	Liver	Liver
11	chr5:57482800-57485800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:57482800-57486200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:57482800-57486200	Enhancers	HSMMtube	muscle
14	chr5:57483000-57484400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:57483000-57485000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:57483000-57486000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:57483000-57488400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:57483400-57484400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:57483400-57485000	Enhancers	HUVEC	blood vessel
20	chr5:57483400-57485000	Enhancers	NH-A	brain
21	chr5:57483400-57485600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:57483600-57484000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:57483600-57484000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr5:57483600-57484200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:57483600-57484200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr5:57483600-57484400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:57483600-57484600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:57483600-57485400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:57483600-57485600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:57483600-57486000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:57483600-57486000	Enhancers	NHDF-Ad	bronchial
32	chr5:57483600-57486000	Enhancers	NHLF	lung
33	chr5:57483800-57484000	Enhancers	Hela-S3	cervix
34	chr5:57483800-57484400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr5:57483800-57484400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr5:57483800-57484400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr5:57483800-57484400	Flanking Active TSS	NHEK	skin
38	chr5:57483800-57484600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:57483800-57485200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:57483800-57485400	Enhancers	Adipose Nuclei	Adipose

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