Variant report

Variant	rs17371148
Chromosome Location	chr5:57445368-57445369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17370923	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17438760	1.00[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs58675651	0.81[EUR][1000 genomes]
rs66464750	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66473131	0.82[EUR][1000 genomes]
rs66812437	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67843459	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6882495	0.89[CEU][hapmap]
rs72753372	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57444000-57446600	Enhancers	HSMMtube	muscle
3	chr5:57444200-57445600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57444200-57445800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:57445000-57445400	Weak transcription	HSMM	muscle
6	chr5:57445000-57445600	Enhancers	A549	lung
7	chr5:57445000-57445800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:57445000-57445800	Enhancers	Fetal Heart	heart
9	chr5:57445000-57445800	Enhancers	NHDF-Ad	bronchial
10	chr5:57445000-57446000	Enhancers	Hela-S3	cervix
11	chr5:57445000-57446400	Enhancers	HMEC	breast
12	chr5:57445200-57445600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:57445200-57445800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:57445200-57446200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:57445200-57446200	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links