Variant report

Variant	rs151870
Chromosome Location	chr5:57610781-57610782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57609295..57611170-chr5:57616223..57618224,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10045556	0.87[ASN][1000 genomes]
rs10057511	0.80[CEU][hapmap]
rs10076155	0.89[ASN][1000 genomes]
rs12187672	0.89[ASN][1000 genomes]
rs12188902	0.89[ASN][1000 genomes]
rs12658947	0.88[ASN][1000 genomes]
rs12659412	0.88[ASN][1000 genomes]
rs1477347	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs151865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs151872	0.94[ASN][1000 genomes]
rs151873	0.94[ASN][1000 genomes]
rs151874	0.94[ASN][1000 genomes]
rs151875	0.94[ASN][1000 genomes]
rs151876	0.94[ASN][1000 genomes]
rs151877	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs151878	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs168652	1.00[EUR][1000 genomes]
rs173448	1.00[EUR][1000 genomes]
rs17695268	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17696032	0.89[ASN][1000 genomes]
rs181749	0.96[EUR][1000 genomes]
rs193497	1.00[EUR][1000 genomes]
rs2052548	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs245281	0.94[EUR][1000 genomes]
rs245283	0.94[EUR][1000 genomes]
rs245284	0.90[EUR][1000 genomes]
rs245286	1.00[EUR][1000 genomes]
rs245465	1.00[EUR][1000 genomes]
rs245466	1.00[EUR][1000 genomes]
rs245467	1.00[EUR][1000 genomes]
rs245468	0.96[EUR][1000 genomes]
rs245469	0.92[EUR][1000 genomes]
rs26970	0.88[EUR][1000 genomes]
rs26971	0.88[EUR][1000 genomes]
rs26972	0.88[EUR][1000 genomes]
rs26973	0.88[EUR][1000 genomes]
rs27568	0.88[EUR][1000 genomes]
rs32629	0.88[EUR][1000 genomes]
rs36646	0.92[EUR][1000 genomes]
rs36647	0.92[EUR][1000 genomes]
rs393809	0.90[EUR][1000 genomes]
rs40622	0.92[EUR][1000 genomes]
rs41445844	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs420498	0.90[EUR][1000 genomes]
rs42317	0.92[EUR][1000 genomes]
rs56942787	0.89[ASN][1000 genomes]
rs5868101	0.90[ASN][1000 genomes]
rs68192123	0.89[ASN][1000 genomes]
rs6858896	0.89[ASN][1000 genomes]
rs6862014	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs6891097	0.89[CEU][hapmap]
rs72755740	0.88[ASN][1000 genomes]
rs72755746	0.90[ASN][1000 genomes]
rs72755747	0.90[ASN][1000 genomes]
rs835232	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57608400-57616600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:57609200-57615400	Weak transcription	Psoas Muscle	Psoas
3	chr5:57610000-57611200	Enhancers	Hela-S3	cervix
4	chr5:57610000-57611200	Enhancers	NHEK	skin
5	chr5:57610200-57611000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:57610200-57611000	Enhancers	HMEC	breast
7	chr5:57610200-57611200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:57610200-57611200	Enhancers	A549	lung
9	chr5:57610200-57611400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:57610400-57611000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:57610400-57611200	Enhancers	HUVEC	blood vessel
12	chr5:57610400-57611600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links