Variant report

Variant	rs6891097
Chromosome Location	chr5:57479300-57479301
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57471289..57472885-chr5:57478169..57480809,2	MCF-7	breast:
3	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
4	chr5:57182312..57184044-chr5:57477826..57480131,3	MCF-7	breast:
5	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:
6	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:
7	chr5:56730659..56732507-chr5:57478497..57480743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10057511	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs16887914	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2910598	0.99[ASN][1000 genomes]
rs2910599	1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs2964206	0.99[ASN][1000 genomes]
rs34139715	0.88[EUR][1000 genomes]
rs34563011	0.90[EUR][1000 genomes]
rs35696122	0.96[ASN][1000 genomes]
rs41445844	0.90[CEU][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs6862014	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs6896231	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72753380	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72753383	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72753387	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs764630	0.81[CEU][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:57477200-57486000	Enhancers	HSMM	muscle
3	chr5:57477400-57479400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:57477400-57479400	Enhancers	HUVEC	blood vessel
5	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
6	chr5:57477600-57479400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
8	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:57478200-57480000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr5:57478200-57480800	Enhancers	A549	lung
12	chr5:57478400-57480000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:57478400-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:57478600-57482200	Enhancers	HMEC	breast
15	chr5:57478600-57482800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:57478600-57482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:57478600-57483800	Enhancers	NHEK	skin
18	chr5:57478800-57479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:57478800-57480000	Weak transcription	NHDF-Ad	bronchial
20	chr5:57478800-57480000	Weak transcription	Osteobl	bone
21	chr5:57478800-57480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:57478800-57481400	Weak transcription	Gastric	stomach
23	chr5:57478800-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:57478800-57483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr5:57478800-57484200	Weak transcription	Left Ventricle	heart
26	chr5:57478800-57484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:57479000-57479400	Weak transcription	Fetal Muscle Leg	muscle
28	chr5:57479000-57483600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:57479000-57484000	Weak transcription	Fetal Kidney	kidney
30	chr5:57479200-57483600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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