Variant report

Variant	rs764630
Chromosome Location	chr5:57454970-57454971
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10067411	0.81[JPT][hapmap]
rs16887914	0.81[EUR][1000 genomes]
rs2216681	0.80[ASN][1000 genomes]
rs2910595	0.80[ASN][1000 genomes]
rs2910596	0.86[ASN][1000 genomes]
rs2910602	0.87[ASN][1000 genomes]
rs2910603	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2910604	0.81[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2962014	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2964187	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2964188	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2964189	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4700257	0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6868757	0.81[JPT][hapmap]
rs6891097	0.81[CEU][hapmap]
rs6896442	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72753380	0.81[EUR][1000 genomes]
rs72753382	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72753383	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:57453000-57457000	Weak transcription	Pancreas	Pancrea
3	chr5:57453400-57455600	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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