Variant report
| Variant | rs2910595 |
|---|---|
| Chromosome Location | chr5:57492173-57492174 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10940600 | 0.85[AMR][1000 genomes] |
| rs10940601 | 0.85[AMR][1000 genomes] |
| rs12521574 | 0.81[AMR][1000 genomes] |
| rs13163245 | 0.83[AMR][1000 genomes] |
| rs1473199 | 0.85[AMR][1000 genomes] |
| rs1549242 | 0.85[AMR][1000 genomes] |
| rs2052545 | 0.85[AMR][1000 genomes] |
| rs2112905 | 0.85[AMR][1000 genomes] |
| rs2194194 | 0.83[AMR][1000 genomes] |
| rs2216681 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2910596 | 0.92[ASN][1000 genomes] |
| rs2910597 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2910602 | 0.93[ASN][1000 genomes] |
| rs2910603 | 0.93[ASN][1000 genomes] |
| rs2910604 | 1.00[ASN][1000 genomes] |
| rs2962014 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2964187 | 0.93[ASN][1000 genomes] |
| rs2964188 | 0.93[ASN][1000 genomes] |
| rs2964189 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35057576 | 0.85[AMR][1000 genomes] |
| rs35133491 | 0.81[AMR][1000 genomes] |
| rs6450469 | 0.85[AMR][1000 genomes] |
| rs6889867 | 0.81[AMR][1000 genomes] |
| rs6896442 | 0.82[ASN][1000 genomes] |
| rs72753382 | 0.82[ASN][1000 genomes] |
| rs7446005 | 0.85[AMR][1000 genomes] |
| rs764630 | 0.80[ASN][1000 genomes] |
| rs7734713 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv969959 | chr5:57486620-57495174 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57487800-57497600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr5:57492000-57492200 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
