Variant report

Variant	rs2964187
Chromosome Location	chr5:57481184-57481185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
2	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
3	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:
4	chr5:57480978..57482713-chr5:57745700..57747578,2	MCF-7	breast:
5	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10067411	0.81[JPT][hapmap]
rs2216681	0.93[ASN][1000 genomes]
rs2910595	0.93[ASN][1000 genomes]
rs2910596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910598	0.87[EUR][1000 genomes]
rs2910599	0.87[EUR][1000 genomes]
rs2910602	0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910603	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910604	0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2962014	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2964188	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964189	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2964206	0.87[EUR][1000 genomes]
rs35696122	0.83[EUR][1000 genomes]
rs4700257	0.83[ASN][1000 genomes]
rs6868757	0.81[JPT][hapmap]
rs6896442	0.89[ASN][1000 genomes]
rs72753382	0.89[ASN][1000 genomes]
rs764630	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57486000	Enhancers	HSMM	muscle
2	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
3	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:57478400-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:57478600-57482200	Enhancers	HMEC	breast
7	chr5:57478600-57482800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:57478600-57482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:57478600-57483800	Enhancers	NHEK	skin
10	chr5:57478800-57481400	Weak transcription	Gastric	stomach
11	chr5:57478800-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:57478800-57483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:57478800-57484200	Weak transcription	Left Ventricle	heart
14	chr5:57478800-57484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:57479000-57483600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:57479000-57484000	Weak transcription	Fetal Kidney	kidney
17	chr5:57479200-57483600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:57479400-57485200	Weak transcription	Aorta	Aorta
19	chr5:57479600-57482200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:57479600-57483800	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:57480000-57482000	Enhancers	NHDF-Ad	bronchial
22	chr5:57480000-57483400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:57480000-57483600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr5:57480000-57483800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:57480000-57486000	Enhancers	Osteobl	bone
26	chr5:57480400-57481600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:57480600-57481400	Enhancers	HUVEC	blood vessel
28	chr5:57480600-57482000	Enhancers	NH-A	brain
29	chr5:57480800-57481200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:57480800-57481800	Enhancers	NHLF	lung
31	chr5:57480800-57482000	Enhancers	HSMMtube	muscle
32	chr5:57481000-57481200	Enhancers	A549	lung
33	chr5:57481000-57481800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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