Variant report

Variant	rs6896442
Chromosome Location	chr5:57455886-57455887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16887914	0.81[EUR][1000 genomes]
rs2216681	0.82[ASN][1000 genomes]
rs2910595	0.82[ASN][1000 genomes]
rs2910596	0.88[ASN][1000 genomes]
rs2910602	0.89[ASN][1000 genomes]
rs2910603	0.89[ASN][1000 genomes]
rs2910604	0.82[ASN][1000 genomes]
rs2962014	0.90[ASN][1000 genomes]
rs2964187	0.89[ASN][1000 genomes]
rs2964188	0.89[ASN][1000 genomes]
rs2964189	0.82[ASN][1000 genomes]
rs4700257	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72753380	0.81[EUR][1000 genomes]
rs72753382	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753383	0.81[EUR][1000 genomes]
rs764630	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:57453000-57457000	Weak transcription	Pancreas	Pancrea
3	chr5:57455400-57456000	Enhancers	Placenta	Placenta
4	chr5:57455600-57456000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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