Variant report

Variant	rs2962014
Chromosome Location	chr5:57470271-57470272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57469177..57471209-chr5:57754452..57757223,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10053377	0.80[MEX][hapmap]
rs10067411	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10940601	0.93[ASW][hapmap]
rs13173077	0.93[ASW][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap]
rs13173083	0.93[ASW][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap]
rs2112905	0.93[ASW][hapmap];0.86[CHD][hapmap]
rs2216681	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910595	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2910596	0.83[ASN][1000 genomes]
rs2910597	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs2910602	0.84[ASN][1000 genomes]
rs2910603	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2910604	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2910608	0.85[AMR][1000 genomes]
rs2964179	0.85[AMR][1000 genomes]
rs2964187	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2964188	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2964189	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4700257	0.84[ASN][1000 genomes]
rs6868757	0.92[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs6873296	0.93[ASW][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap]
rs6876733	0.81[ASN][1000 genomes]
rs6896442	0.90[ASN][1000 genomes]
rs72753382	0.90[ASN][1000 genomes]
rs764630	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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