Variant report

Variant	rs10053377
Chromosome Location	chr5:57440256-57440257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11960642	0.81[AMR][1000 genomes]
rs13173077	0.80[MEX][hapmap];0.84[TSI][hapmap]
rs13173083	0.80[MEX][hapmap];0.84[TSI][hapmap]
rs2910568	0.85[AMR][1000 genomes]
rs2910570	0.85[AMR][1000 genomes]
rs2962005	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2962006	0.85[AMR][1000 genomes]
rs2962014	0.80[MEX][hapmap]
rs6868757	0.88[ASW][hapmap];0.84[MEX][hapmap]
rs6873296	0.80[MEX][hapmap];0.82[TSI][hapmap]
rs6876418	1.00[ASW][hapmap];0.84[GIH][hapmap];0.92[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs764629	0.85[AMR][1000 genomes]
rs989578	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10053377	GZMA	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57438800-57440400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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