Variant report

Variant	rs6876418
Chromosome Location	chr5:57441624-57441625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10053377	1.00[ASW][hapmap];0.84[GIH][hapmap];0.92[LWK][hapmap];0.88[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10067411	0.80[ASN][1000 genomes]
rs10940601	0.80[GIH][hapmap]
rs11960642	0.82[ASN][1000 genomes]
rs13173077	0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.84[TSI][hapmap]
rs13173083	0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.84[TSI][hapmap]
rs2112905	0.82[CHB][hapmap];0.91[CHD][hapmap]
rs2910568	0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2910570	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2910608	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs2962005	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2962006	0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6868757	0.87[ASW][hapmap];0.81[CHD][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6873296	0.82[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.81[TSI][hapmap]
rs6876733	0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6891650	0.82[CHB][hapmap]
rs764629	0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs989578	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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