Variant report

Variant	rs2910570
Chromosome Location	chr5:57449519-57449520
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10053377	0.85[AMR][1000 genomes]
rs10940601	0.96[YRI][hapmap]
rs11960642	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12521574	0.87[ASN][1000 genomes]
rs13163245	0.85[ASN][1000 genomes]
rs13173077	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs13173083	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs13178618	1.00[YRI][hapmap]
rs13180583	0.89[ASN][1000 genomes]
rs1549242	0.85[ASN][1000 genomes]
rs2112905	0.96[YRI][hapmap];0.87[ASN][1000 genomes]
rs2910568	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910608	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2962005	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2962006	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2964179	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2964181	0.89[ASN][1000 genomes]
rs35057576	0.87[ASN][1000 genomes]
rs35133491	0.87[ASN][1000 genomes]
rs6450469	0.87[ASN][1000 genomes]
rs6873296	0.91[YRI][hapmap];0.88[ASN][1000 genomes]
rs6876418	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6889867	0.81[ASN][1000 genomes]
rs6891650	1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs7446005	0.87[ASN][1000 genomes]
rs764629	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7734713	0.87[ASN][1000 genomes]
rs989578	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57445800-57452000	Weak transcription	NHDF-Ad	bronchial
3	chr5:57446000-57451400	Weak transcription	HSMM	muscle
4	chr5:57446600-57451800	Weak transcription	HSMMtube	muscle
5	chr5:57447200-57457000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:57449400-57452200	Weak transcription	A549	lung

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