Variant report

Variant	rs13178618
Chromosome Location	chr5:57478921-57478922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57471289..57472885-chr5:57478169..57480809,2	MCF-7	breast:
3	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
4	chr5:57182312..57184044-chr5:57477826..57480131,3	MCF-7	breast:
5	chr5:57477268..57479454-chr5:57480690..57483855,3	MCF-7	breast:
6	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:
7	chr5:56730659..56732507-chr5:57478497..57480743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10940600	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10940601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11960642	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12521574	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13163245	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13173077	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13173083	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13180583	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1473199	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549242	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2052545	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2112905	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2194194	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2910568	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2910608	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2962006	0.93[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap]
rs2964179	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2964181	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35057576	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35133491	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6450469	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6873296	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6889867	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6891650	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7446005	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs764629	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7734713	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57479200	Enhancers	Stomach Mucosa	stomach
2	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57477200-57486000	Enhancers	HSMM	muscle
4	chr5:57477400-57479000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:57477400-57479200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:57477400-57479200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:57477400-57479400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:57477400-57479400	Enhancers	HUVEC	blood vessel
9	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
10	chr5:57477600-57479200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:57477600-57479400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
13	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr5:57478000-57479000	Enhancers	Fetal Kidney	kidney
15	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:57478200-57479000	Enhancers	Brain Germinal Matrix	brain
17	chr5:57478200-57480000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr5:57478200-57480800	Enhancers	A549	lung
19	chr5:57478400-57480000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:57478400-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:57478600-57479000	Enhancers	Fetal Muscle Leg	muscle
22	chr5:57478600-57482200	Enhancers	HMEC	breast
23	chr5:57478600-57482800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:57478600-57482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:57478600-57483800	Enhancers	NHEK	skin
26	chr5:57478800-57479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:57478800-57480000	Weak transcription	NHDF-Ad	bronchial
28	chr5:57478800-57480000	Weak transcription	Osteobl	bone
29	chr5:57478800-57480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:57478800-57481400	Weak transcription	Gastric	stomach
31	chr5:57478800-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr5:57478800-57483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:57478800-57484200	Weak transcription	Left Ventricle	heart
34	chr5:57478800-57484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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