Variant report

Variant	rs2964179
Chromosome Location	chr5:57472360-57472361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57471619..57474921-chr5:57753205..57755794,3	MCF-7	breast:
2	chr5:57471289..57472885-chr5:57478169..57480809,2	MCF-7	breast:
3	chr5:57471335..57473541-chr5:57748277..57749882,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10940600	0.90[EUR][1000 genomes]
rs10940601	0.90[EUR][1000 genomes]
rs11960642	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12521574	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13163245	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13173077	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13173083	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13178618	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13180583	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1473199	0.90[EUR][1000 genomes]
rs1549242	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2052545	0.90[EUR][1000 genomes]
rs2112905	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2194194	0.89[EUR][1000 genomes]
rs2910568	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2910570	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2910608	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2962005	0.82[ASN][1000 genomes]
rs2962006	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2962014	0.85[AMR][1000 genomes]
rs2964181	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35057576	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35133491	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6450469	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6873296	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6889867	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6891650	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7446005	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs764629	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7734713	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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