Variant report

Variant	rs6891650
Chromosome Location	chr5:57479601-57479602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57479311..57481090-chr5:57734441..57736091,2	MCF-7	breast:
2	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
3	chr5:57471289..57472885-chr5:57478169..57480809,2	MCF-7	breast:
4	chr5:57476351..57480907-chr5:57753998..57756749,5	MCF-7	breast:
5	chr5:57182312..57184044-chr5:57477826..57480131,3	MCF-7	breast:
6	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:
7	chr5:56730659..56732507-chr5:57478497..57480743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10940600	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10940601	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11960642	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12521574	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13163245	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13173077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178618	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13180583	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473199	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1549242	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052545	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2112905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2194194	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2910568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2910570	0.88[ASN][1000 genomes]
rs2910608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2962005	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2962006	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs2964179	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2964181	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35057576	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35133491	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6450469	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876418	0.82[CHB][hapmap]
rs6889867	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7446005	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs764629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734713	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57480000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:57477200-57486000	Enhancers	HSMM	muscle
3	chr5:57477400-57483600	Enhancers	Hela-S3	cervix
4	chr5:57477600-57480400	Enhancers	HSMMtube	muscle
5	chr5:57477600-57483600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:57478000-57483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:57478200-57480000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr5:57478200-57480800	Enhancers	A549	lung
9	chr5:57478400-57480000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:57478400-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:57478600-57482200	Enhancers	HMEC	breast
12	chr5:57478600-57482800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:57478600-57482800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:57478600-57483800	Enhancers	NHEK	skin
15	chr5:57478800-57480000	Weak transcription	NHDF-Ad	bronchial
16	chr5:57478800-57480000	Weak transcription	Osteobl	bone
17	chr5:57478800-57480600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:57478800-57481400	Weak transcription	Gastric	stomach
19	chr5:57478800-57482000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:57478800-57483000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:57478800-57484200	Weak transcription	Left Ventricle	heart
22	chr5:57478800-57484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:57479000-57483600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:57479000-57484000	Weak transcription	Fetal Kidney	kidney
25	chr5:57479200-57483600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:57479400-57480600	Weak transcription	HUVEC	blood vessel
27	chr5:57479400-57485200	Weak transcription	Aorta	Aorta
28	chr5:57479600-57482200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:57479600-57483800	Weak transcription	Fetal Muscle Leg	muscle

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