Variant report

Variant	rs2962005
Chromosome Location	chr5:57447008-57447009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10053377	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11960642	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13173077	0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs13173083	0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs2112905	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs2910568	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2910570	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2910608	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2962006	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2964179	0.82[ASN][1000 genomes]
rs6868757	0.80[AMR][1000 genomes]
rs6873296	0.86[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap]
rs6876418	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6876733	0.83[AMR][1000 genomes]
rs6891650	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs764629	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs989578	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57445600-57448800	Weak transcription	A549	lung
3	chr5:57445800-57452000	Weak transcription	NHDF-Ad	bronchial
4	chr5:57446000-57451400	Weak transcription	HSMM	muscle
5	chr5:57446600-57451800	Weak transcription	HSMMtube	muscle
6	chr5:57447000-57447200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:57447000-57447400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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