Variant report

Variant	rs989578
Chromosome Location	chr5:57443632-57443633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10053377	1.00[ASW][hapmap];0.82[GIH][hapmap];0.94[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10067411	0.80[ASN][1000 genomes]
rs10940601	0.83[GIH][hapmap]
rs11960642	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13173077	0.81[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.80[JPT][hapmap];0.81[TSI][hapmap]
rs13173083	0.81[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.80[JPT][hapmap];0.81[TSI][hapmap]
rs2112905	0.81[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap]
rs2910568	0.81[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs2910570	0.85[ASN][1000 genomes]
rs2910608	0.81[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs2962005	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2962006	0.81[CHB][hapmap];0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs6868757	0.87[ASW][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6873296	0.81[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.80[JPT][hapmap]
rs6876418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876733	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6891650	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs764629	0.81[CHB][hapmap];0.80[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs989578	GZMA	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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