Variant report

Variant	rs6868757
Chromosome Location	chr5:57442961-57442962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10053377	0.88[ASW][hapmap];0.84[MEX][hapmap]
rs10067411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2910597	0.82[TSI][hapmap]
rs2910604	0.81[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs2962005	0.80[AMR][1000 genomes]
rs2962014	0.92[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs2964187	0.81[JPT][hapmap]
rs2964188	0.81[JPT][hapmap]
rs2964189	0.81[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap]
rs6876418	0.87[ASW][hapmap];0.81[CHD][hapmap];0.96[MEX][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6876733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs764630	0.81[JPT][hapmap]
rs9292154	0.81[JPT][hapmap]
rs989578	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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