Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
2	chr5:57485425..57487725-chr5:57748196..57751309,3	MCF-7	breast:
3	chr5:57485569..57487719-chr5:57497536..57499208,2	MCF-7	breast:
4	chr5:57481839..57487904-chr5:57753425..57757545,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10940600	0.85[AMR][1000 genomes]
rs10940601	0.81[ASW][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs12521574	0.81[AMR][1000 genomes]
rs13163245	0.83[AMR][1000 genomes]
rs13173077	0.81[ASW][hapmap]
rs13173083	0.81[ASW][hapmap]
rs1473199	0.85[AMR][1000 genomes]
rs1549242	0.85[AMR][1000 genomes]
rs2052545	0.85[AMR][1000 genomes]
rs2112905	0.81[ASW][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs2194194	0.83[AMR][1000 genomes]
rs2216681	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2910595	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2910604	0.83[CHB][hapmap]
rs2962014	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs2964189	0.87[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35057576	0.85[AMR][1000 genomes]
rs35133491	0.81[AMR][1000 genomes]
rs6450469	0.85[AMR][1000 genomes]
rs6868757	0.82[TSI][hapmap]
rs6873296	0.81[ASW][hapmap]
rs6889867	0.81[AMR][1000 genomes]
rs7446005	0.85[AMR][1000 genomes]
rs7734713	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969959	chr5:57486620-57495174	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57483000-57488400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:57484200-57488200	Enhancers	Hela-S3	cervix
3	chr5:57485400-57487800	Weak transcription	Adipose Nuclei	Adipose
4	chr5:57485800-57490400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:57486000-57488200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:57486800-57488000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:57487000-57487800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:57487200-57488200	Enhancers	HMEC	breast
9	chr5:57487400-57488000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:57487600-57488200	Enhancers	A549	lung

Quick Search: