Variant report

Variant	rs1549242
Chromosome Location	chr5:57484585-57484586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
2	chr5:57476926..57490322-chr5:57753628..57758155,26	MCF-7	breast:
3	chr5:57484407..57487299-chr5:57751311..57753522,2	MCF-7	breast:
4	chr5:57477916..57481431-chr5:57481890..57485680,5	MCF-7	breast:
5	chr5:57481839..57487904-chr5:57753425..57757545,13	MCF-7	breast:
6	chr5:57482131..57485678-chr5:57554046..57557182,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10940600	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10940601	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11960642	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12521574	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13163245	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13173077	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13173083	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13178618	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13180583	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1473199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2052545	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2112905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2194194	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2216681	0.85[AMR][1000 genomes]
rs2910568	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2910570	0.85[ASN][1000 genomes]
rs2910595	0.85[AMR][1000 genomes]
rs2910597	0.85[AMR][1000 genomes]
rs2910608	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962006	0.85[ASN][1000 genomes]
rs2964179	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2964181	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964189	0.84[AMR][1000 genomes]
rs35057576	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35133491	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6450469	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873296	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6889867	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6891650	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7446005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs764629	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7734713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57477200-57486000	Enhancers	HSMM	muscle
2	chr5:57479400-57485200	Weak transcription	Aorta	Aorta
3	chr5:57480000-57486000	Enhancers	Osteobl	bone
4	chr5:57482600-57486000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:57482600-57486000	Enhancers	HMEC	breast
6	chr5:57482800-57485000	Enhancers	Liver	Liver
7	chr5:57482800-57485800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:57482800-57486200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:57482800-57486200	Enhancers	HSMMtube	muscle
10	chr5:57483000-57485000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:57483000-57486000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:57483000-57488400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:57483400-57485000	Enhancers	HUVEC	blood vessel
14	chr5:57483400-57485000	Enhancers	NH-A	brain
15	chr5:57483400-57485600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:57483600-57484600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:57483600-57485400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:57483600-57485600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr5:57483600-57486000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:57483600-57486000	Enhancers	NHDF-Ad	bronchial
21	chr5:57483600-57486000	Enhancers	NHLF	lung
22	chr5:57483800-57484600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:57483800-57485200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:57483800-57485400	Enhancers	Adipose Nuclei	Adipose
25	chr5:57484000-57485000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:57484000-57485200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:57484200-57484600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:57484200-57484600	Active TSS	Psoas Muscle	Psoas
29	chr5:57484200-57484600	Active TSS	A549	lung
30	chr5:57484200-57486000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:57484200-57488200	Enhancers	Hela-S3	cervix
32	chr5:57484400-57485000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:57484400-57485000	Enhancers	NHEK	skin
34	chr5:57484400-57485200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:57484400-57485600	Weak transcription	Fetal Kidney	kidney
36	chr5:57484400-57486800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:57484400-57487400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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