Variant report

Variant	rs9292154
Chromosome Location	chr5:57445697-57445698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10043517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10067411	0.82[JPT][hapmap]
rs6868757	0.81[JPT][hapmap]
rs9292152	0.90[YRI][hapmap]
rs9292153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033051	chr5:57380218-57471801	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57439600-57451000	Weak transcription	Fetal Brain Male	brain
2	chr5:57444000-57446600	Enhancers	HSMMtube	muscle
3	chr5:57444200-57445800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:57445000-57445800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:57445000-57445800	Enhancers	Fetal Heart	heart
6	chr5:57445000-57445800	Enhancers	NHDF-Ad	bronchial
7	chr5:57445000-57446000	Enhancers	Hela-S3	cervix
8	chr5:57445000-57446400	Enhancers	HMEC	breast
9	chr5:57445200-57445800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:57445200-57446200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:57445200-57446200	Enhancers	NHEK	skin
12	chr5:57445400-57446000	Enhancers	HSMM	muscle
13	chr5:57445600-57448800	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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