Variant report

Variant	rs2964206
Chromosome Location	chr5:57495341-57495342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16887914	0.88[ASN][1000 genomes]
rs2910596	0.87[EUR][1000 genomes]
rs2910598	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910599	1.00[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2910602	0.87[EUR][1000 genomes]
rs2910603	0.87[EUR][1000 genomes]
rs2964187	0.84[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2964188	0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs35696122	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6891097	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[ASN][1000 genomes]
rs6896231	0.88[ASN][1000 genomes]
rs72753380	0.86[ASN][1000 genomes]
rs72753383	0.88[ASN][1000 genomes]
rs72753387	0.88[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57487800-57497600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:57493800-57496200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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