Variant report

Variant	rs73099025
Chromosome Location	chr5:57568183-57568184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10038254	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10051111	0.93[AFR][1000 genomes]
rs10056664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213740	0.89[AFR][1000 genomes]
rs10214231	0.89[AFR][1000 genomes]
rs151873	0.83[AFR][1000 genomes]
rs151874	0.83[AFR][1000 genomes]
rs151875	0.83[AFR][1000 genomes]
rs151876	0.83[AFR][1000 genomes]
rs16887977	0.85[AMR][1000 genomes]
rs56041252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60501056	0.91[AMR][1000 genomes]
rs6860682	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6885767	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73099017	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73099097	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2762520	chr5:57557770-57578659	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57563200-57569000	Weak transcription	A549	lung
2	chr5:57567000-57569200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:57567000-57571600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:57567200-57568200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:57568000-57570600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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