Variant report

Variant	rs10213740
Chromosome Location	chr5:57590302-57590303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10038254	0.86[AFR][1000 genomes]
rs10051111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056664	0.89[AFR][1000 genomes]
rs10061889	0.89[AMR][1000 genomes]
rs10214231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs151873	0.94[AFR][1000 genomes]
rs151874	0.94[AFR][1000 genomes]
rs151875	0.94[AFR][1000 genomes]
rs151876	0.94[AFR][1000 genomes]
rs56041252	0.89[AFR][1000 genomes]
rs6860682	0.81[AFR][1000 genomes]
rs73099017	0.86[AFR][1000 genomes]
rs73099025	0.89[AFR][1000 genomes]
rs73099097	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3489100	chr5:57545689-57669673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3489101	chr5:57545689-57669673	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57590000-57591400	Enhancers	HMEC	breast
2	chr5:57590000-57591600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57590200-57591400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57590200-57591400	Enhancers	NHEK	skin
5	chr5:57590200-57591600	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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