Variant report

Variant	rs60501056
Chromosome Location	chr5:57539493-57539494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57538142..57540625-chr5:57748575..57750284,2	MCF-7	breast:
2	chr5:57535441..57538302-chr5:57538781..57541164,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10038254	0.91[AMR][1000 genomes]
rs10056664	0.91[AMR][1000 genomes]
rs56041252	0.91[AMR][1000 genomes]
rs6860682	0.84[AMR][1000 genomes]
rs6885767	0.84[AMR][1000 genomes]
rs73099017	0.91[AMR][1000 genomes]
rs73099025	0.91[AMR][1000 genomes]
rs73099097	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432746	chr5:57502859-57547419	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57526200-57544000	Weak transcription	Aorta	Aorta
2	chr5:57534800-57555200	Weak transcription	Left Ventricle	heart
3	chr5:57535400-57540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:57535400-57540800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:57536000-57540400	Weak transcription	Psoas Muscle	Psoas
6	chr5:57536200-57541400	Weak transcription	Right Atrium	heart
7	chr5:57536200-57542200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:57536400-57540800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:57536600-57544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr5:57536800-57542200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:57537400-57540400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:57537400-57541800	Weak transcription	NHDF-Ad	bronchial
13	chr5:57537400-57542200	Weak transcription	Osteobl	bone
14	chr5:57537600-57542200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:57537600-57542200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:57537600-57542200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:57537600-57542400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:57537600-57542400	Weak transcription	NHLF	lung
19	chr5:57537600-57542600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:57537800-57539800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr5:57537800-57540800	Weak transcription	A549	lung
22	chr5:57537800-57541000	Enhancers	HUVEC	blood vessel
23	chr5:57537800-57542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:57537800-57542200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:57538000-57540200	Weak transcription	Adipose Nuclei	Adipose
26	chr5:57538000-57540800	Weak transcription	Hela-S3	cervix

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