Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1615028	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1693511	1.00[ASW][hapmap];0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1693513	0.94[AMR][1000 genomes]
rs1693520	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1693521	0.84[GIH][hapmap]
rs1724586	1.00[ASW][hapmap];0.89[CEU][hapmap];0.96[GIH][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1724613	0.88[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1724614	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1724615	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1917972	0.87[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2246133	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2444018	0.85[EUR][1000 genomes]
rs2453983	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2462855	1.00[ASN][1000 genomes]
rs2600901	0.90[EUR][1000 genomes]
rs2693463	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4238392	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72734991	1.00[AFR][1000 genomes]
rs72736657	1.00[AFR][1000 genomes]
rs72738509	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054899	chr15:52662365-52803756	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1832020	chr15:52702400-52901914	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52757200-52770400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:52757400-52771800	Weak transcription	Primary T cells from cord blood	blood
3	chr15:52758600-52772000	Weak transcription	HUVEC	blood vessel
4	chr15:52758600-52773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:52758800-52773000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:52759000-52772000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr15:52759200-52770600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:52759200-52771000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:52759200-52778200	Weak transcription	Right Atrium	heart
10	chr15:52759400-52773000	Weak transcription	Brain Angular Gyrus	brain
11	chr15:52759800-52773000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:52760400-52770600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:52762600-52770000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:52763600-52769800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:52764200-52773000	Weak transcription	Brain Anterior Caudate	brain

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